wiki:SoftwareDev

"The GPC defines success as a true network of peers. ... From a technical resource perspective, all sites will leverage their established (or under development) i2b2 repositories that provide common infrastructure of the sites clinical and translational science institutes/centers. ... In the later part of the contract period, these teams will work to embed CER components in the EHR, and through their collaboration advance clinical research by incorporating new, rich data sources into i2b2. This work is complemented by existing technical staff with expertise in Epic, Cattails, and Cerner EHR systems." - RC14 of GPC proposal

nearby: DataStandardization, DataRepositoryManagement, DataSecurity, MethodsCore, MultiSiteDev

Babel I2B2 Terminology Sharing Service

babel is the GPC terminology alignment service. To start, we have loaded terms from i2b2 services from (almost) all of the DevTeams. We're working toward a shared ontology, as detailed below.

Mailing List

Meetings, Teleconferences

HackathonFive Feb 12-13, 2018 in Kansas City, KS

HackathonFour was Jan 2017; HackathonThree was Jan 2016; HackathonOne was Feb 2014; HackathonTwo was Jan 2015.

Weekly Teleconference Agenda notes

For teleconference information, stay tuned to gpc-dev.

for next Tues 11amCT:

  1. Convene, take roll, review records and plan next meeting
    1. Meeting ID and access code: 817-393-381; call +1 (571) 317-3131
    2. roll: all 10 DevTeams represented? comments on the agenda?
      KUMC, CMH, UIOWA, WISC, MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW
    3. comments on the agenda? on last week's notes (#12)?
    4. next meeting: ... scribe volunteer?
  2. stuff from last week (#12)
  3. stuff from tickets by milestone
  4. stuff from gpc-dev email
  5. new/closed/reopened tickets

see also KeyGoalTracking, MolecularTestingStudy

Before you request an agenda item

If you find yourself writing to Dan C. with a subject like "Item for today's call," please move the fact that you'd like to discuss it on the call to a p.s. in your message and put the substance of what you want to discuss in the subject and body and send it to all concerned (e.g. via gpc-dev).

It's best to start the discussion in substance in email, leaving aside the question of whether we'll talk about it on a phone call. If, when you see the agenda come out, you don't see your item on it and you're not satisfied with the email discussion, you can always ask for it to be added. -- getting gpc-dev work done (vs. asking for agenda items) Dan Connolly May 24 2017

De-Identification Software

MCW Site Documentation Site Also See the : GPC-DEID Listserve

Tracking bugs, issues, tasks, etc.

Open TracTickets, by milestone, excepting

  • minor priority tickets; e.g. worklist items whose start date has yet to arrive
  • dev-tools:

See also roadmap or report:9 for milestone due dates, worklist mash-up.

Milestone: cancer-rcr-1 (4 matches)

Ticket Type Summary Component Owner Reporter Keywords Blocked By Modified Milestone
#651 task Load infusion data to CDM v 4.0 med_admin table and submit data-stds rwaitman bgryzlak all-sites #650 2 days cancer-rcr-1
#662 task Feedback to sites on submitted data (first submission) data-stds brad_mcdowell bgryzlak #661, #667 5 days cancer-rcr-1
#663 task Pull and submit tumor analysis dataset and CDM tables for cohort (2nd submission) data-sharing bgryzlak bgryzlak all-sites #651, #662, #675 3 weeks cancer-rcr-1
#674 problem Submit final code lists to coordinating center for PCORnet queries data-stds ryan-carnahan@… bgryzlak #667 3 months cancer-rcr-1

Milestone: next-d (2 matches)

Ticket Type Summary Component Owner Reporter Keywords Blocked By Modified Milestone
#545 task Study sample and DM sample definition for next-d data-sharing tmcneely afurmanchuck #546, #551, #571 13 days next-d
#682 task next-d 1st batch: Demographic, Encounter, Socio-economic status (SES) data-stds meiliu meiliu 4 days next-d

Milestone: cancer-rcr-3 (2 matches)

Ticket Type Summary Component Owner Reporter Keywords Blocked By Modified Milestone
#647 task Send copy of CDM to KUMC for Cancer RCR / GROUSE integration testing data-stds mosaa@… hweedman 6 days cancer-rcr-3
#677 enhancement Develop and test Aim 3 SAS code data-stds rwaitman dconnolly 5 weeks cancer-rcr-3

Milestone: grouse-3 (6 matches)

Ticket Type Summary Component Owner Reporter Keywords Blocked By Modified Milestone
#402 enhancement enhanced data resource from GPC Cohort Characterization study with CMS data methods-core meiliu meiliu gpc-cms-cc record-linkage #133, #401, #564, #581, #617 3 months grouse-3
#617 enhancement two more years of CMS data for GROUSE data-sharing sfennel rwaitman 3 months grouse-3
#618 task collect WISC i2b2 repository copy for GROUSE data-sharing lpatel dconnolly #581 3 months grouse-3
#619 enhancement GROUSE: integrate CDM data from GPC sites data-sharing rwaitman rwaitman GROUSE 5 months grouse-3
#623 enhancement training for GROUSE SQL queries data-sharing mwennberg brad_mcdowell 6 weeks grouse-3
#644 task collect remaining i2b2 datamarts for GROUSE data-sharing lv dconnolly #595 6 days grouse-3

Milestone: snow-shrine-2 (12 matches)

Ticket Type Summary Component Owner Reporter Keywords Blocked By Modified Milestone
#185 design-issue GPC cancer tumor registry ontology data-stds preeder preeder breast-cancer-cohort #332 4 months snow-shrine-2
#243 design-issue GPC Procedure Ontology: CPT, HCPCS data-stds lpatel rwaitman 13 days snow-shrine-2
#332 design-issue How to deal with & in i2b2 paths, especially in NAACCR tumor registry ontology? data-stds dconnolly dconnolly breast-cancer-cohort data-quality 3 months snow-shrine-2
#358 task NAACCR ETL: update all sites to include summary of treatment etc. data-sharing jay.pedersen dconnolly #49, #150, #246, #258, #331, #333, #355, #471, #529 4 months snow-shrine-2
#532 enhancement SNOW SHRINE node at UNMC with SCILHS PCORnet ontology data-sharing jay.pedersen dconnolly #459 6 weeks snow-shrine-2
#588 enhancement SNOW SHRINE node at UIOWA data-sharing nsmith bgryzlak 13 days snow-shrine-2
#600 problem SNOW SHRINE spoke at MU data-sharing tmcneeley rwaitman #459 5 weeks snow-shrine-2
#631 enhancement NAACCR Tumor Registry query via GPS SNOW SHRINE data-sharing preeder rwaitman NAACCR breast-cancer #185 7 weeks snow-shrine-2
#676 problem SNOW SHRINE- UNMC production data-sharing mish ynarayana 3 months snow-shrine-2
#679 problem Portaquery is now missing on Babel data-stds dconnolly rwaitman 3 weeks snow-shrine-2
#680 enhancement SNOW SHRINE spoke monitoring data-stds mish dconnolly 4 weeks snow-shrine-2
#681 enhancement SNOW SHRINE spoke at WISC data-sharing mish dconnolly 3 weeks snow-shrine-2

Milestone: text-notes-1 (2 matches)

Ticket Type Summary Component Owner Reporter Keywords Blocked By Modified Milestone
#431 task Deploy free text notes and de-identification at majority of GPC sites (milestone 2.12.1) data-stds rwaitman btaylor yellow-sticky #573 12 days text-notes-1
#573 enhancement de-identified text notes for on a cohort-by-cohort basis data-sharing mschroeder dconnolly 12 days text-notes-1

Milestone: gpc-phase2-h6 (1 match)

Ticket Type Summary Component Owner Reporter Keywords Blocked By Modified Milestone
#620 enhancement annual update of GROUSE i2b2 data from sites data-sharing rwaitman rwaitman 8 months gpc-phase2-h6

Milestone: snow-shrine-3 (4 matches)

Ticket Type Summary Component Owner Reporter Keywords Blocked By Modified Milestone
#90 design-issue Diagnoses Modifiers for data attribution data-stds campbell campbell 6 days snow-shrine-3
#280 enhancement Medication ontology orgainzed by ingredient data-stds campbell preeder all-sites #568, #592 6 days snow-shrine-3
#411 enhancement Align SNOW SHRINE terminology with expanded SCILHS Ontology for interoperation of query data-stds campbell dconnolly ModelMashup #23, #90, #201, #243, #280, #525, #583 6 days snow-shrine-3
#583 enhancement SNOW SCILHS Lab Metadata Expansion data-stds campbell campbell LOINC Lab_PRO_CM SCILHS all-sites 5 days snow-shrine-3

Milestone: PI-Connect Data Request (1 match)

Ticket Type Summary Component Owner Reporter Keywords Blocked By Modified Milestone
#565 task GPC PI-Connect Phase-II Data Request data-sharing schandaka schandaka PI-Connect 10 months PI-Connect Data Request

Milestone: gpc-phase2-h5 (1 match)

Ticket Type Summary Component Owner Reporter Keywords Blocked By Modified Milestone
#478 enhancement ADAPTABLE monitoring data-sharing schandaka schandaka #274, #476, #496 6 months gpc-phase2-h5

Milestone: tapir-trial-1 (1 match)

Ticket Type Summary Component Owner Reporter Keywords Blocked By Modified Milestone
#521 task identify providers in TAPIR trial methods-core meiliu meiliu #383 12 months tapir-trial-1

Milestone: None (3 matches)

Ticket Type Summary Component Owner Reporter Keywords Blocked By Modified Milestone
#335 enhancement reduce DataBuilder dependencies to i2b2 platform: ant, JVM, JDBC, jboss etl-dev manuells dconnolly 4 weeks
#500 task Teleconference records for GPC Breast Cancer Group calls/webinars data-stds brad_mcdowell bgryzlak 14 months
#589 problem principal diagnosis 10% threshold in PCORNet CDM data-quality dhood dconnolly 4 weeks


Infrastructure and Software Development is led by Dan Connolly.

Last modified 4 months ago Last modified on Oct 23, 2017 5:22:58 PM

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