SNOW SHRINE is discontinued

UW will not join the GPC in the new contract with PCRF (PCORnet 2.0). Because of that decision, we will discontinue being the SNOW hub. -- ​SNOW Sep 25

Earlier Work

status: rough but useful; see #680 for updates

Site	Demographics	Diagnoses	Procedures	Tumor Registry
The University of Kansas Medical Center (KUMC)	OK	OK: #567	OK	OK
Regenstrief (IU)	OK	OK: #575
University of Iowa Healthcare (UIOWA)	#588
The University of Wisconsin-Madison (WISC)	#681
The Medical College of Wisconsin (MCW)	OK	OK*	OK	OK
Marshfield Clinic (Wisconsin) (MCRF)	OK	OK
The University of Minnesota Academic Health Center (UMN)	OK	OK		OK
The University of Missouri (MU)	#600
The University of Nebraska Medical Center (UNMC)	OK	OK*
The University of Texas Health Sciences Center at San Antonio (UTHSCSA)	OK	OK	OK	​ETA end of Feb / March
The University of Texas Southwestern Medical Center (UTSW)	OK	OK	OK	OK

*Postgres nodes (UNMC, MCW) sometimes time out (#676); work-around: run it again while the cache is warm

ref:

• ​SNOW SHRINE status: IU, MCRF, UMN, KUMC, UTSW ok with Dem + DX Dan Connolly Jan 16
• TODO: find procedures status update
• TODO: find tumor registry status update

Ontologies: Demographics and Diagnoses

• ​shrine-ontology - Revision 3570: /PCORI/releases/PCORI Ontology 2.1
  • ​SNOW Shrine Ontologies
    Phillip Reeder Thu Mar 9 08:39:45 CST 2017
  • #525 closed Sep 5, 2017 including one test case:

		<item>
			<item_name>Asian</item_name>
			<item_key>\\SHRINE\SHRINE\DEMOGRAPHIC\RACE\02\</item_key>
		</item>
		<item>
			<item_name>Malignant neoplasm of female breast</item_name>
			<item_key>\\SHRINE\SHRINE\DIAGNOSIS\09\(001-999.99) D~qlur\(140-239.99) N~6vc5\(170-176.99) M~9a4g\(174) Malignan~cb7r\</item_key>
		</item>

Ontologies: NAACCR Tumor Registry

See attachments to NAACCR_ETL Sep 27, 2017:

• shrine_ont.naaccr_ontology.zip​
• AdapterMappings_naaccr_1to1.zip

This is work in progress:

#332

How to deal with & in i2b2 paths, especially in NAACCR tumor registry ontology?

#631

NAACCR Tumor Registry query via GPS SNOW SHRINE

schils-ontology: DVCS clone of SVN repo

I couldn't figure out git-svn, but hg convert worked on the 1st try, so...

​https://bitbucket.org/gpcnetwork/shrine-ontology-clone

$ hg convert https://open.med.harvard.edu/svn/shrine-ontology/PCORI/trunk so-hg
$ cd so-hg
$ hg log --template ' {rev}. {node|short} {date|shortdate} {desc|firstline|strip}\n' | sort -n

0. bab2fdccf1d6 2015-06-04 Organizig new repo per conversation with Philip, part 2: move existing subprojects into their own top-level directories
1. d632bc0ccd01 2015-06-15
2. e9b9c63f2348 2015-06-15

...

48. badc1f4f4489 2015-09-28 Added version 202 test files and mappings for encounters, vitals, diagnoses and labs
49. 2dc4f6b7d15d 2015-09-28 added corrected meds oracle file with dates formated

...

69. fb7d0d580d61 2017-09-06
70. 5d708c60cef7 2018-02-07
71. 12dce4078d49 2018-02-07
72. c4803c9ab3c8 2018-02-07

TODO: figure out how SVN version numbers relate to these hg hashes

ideas

• a nicer page in www.gpcnetwork.org with the snowy cow and such...
• PROVIDE-HF query. DROC request #32. Query is on babel: Shared\PROVIDE-HF
• OK / temp problem / in progress; ETA XXX / not planned status.
• gross patient counts: replace OK with 500K
• active monitoring: #680
  • meanwhile, low tech:
    • ​UMN Shrine Down Andrew Hangsleben Wed Jan 31